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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_6692961_6693044_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6692961 - 6693044
Intron Length:
84

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTC|GTGAGTGCA
5'SS Class:
major
3'SS Sequence:
TCTCCCCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTGAC
U12 Branch Point Sequence:
AGCCCCCTGACC
Flanking Amino Acid:
VVIFFSVVGVVFGKGNMAFW
Intron Amino Acid Position:
637

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.6
0.39
1.3
63.8
36.3
Major BPS
56.5
0.16
1.1
48.6
36.6
Major PPT
74.7
0.56
0.7
65.8
30.2
Minor 5ss
29
-2.4
3
33.1
35.9
Minor BPS
50.3
-0
1.7
59.61
39

Associated Gene:

Gene:
SIDT2
Ensembl Gene ID:
ENSAPLG00000015640
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046219
6688111 - 6694519
6409
ENSAPLT00000041877
6688111 - 6694519
6409
ENSAPLT00000021407
6688111 - 6694519
6409
ENSAPLT00000016299
6688111 - 6694466
6356