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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_6693154_6693260_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6693154 - 6693260
Intron Length:
107

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTGAGGGGT
5'SS Class:
major
3'SS Sequence:
CCTGTCCCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTCTAC
U12 Branch Point Sequence:
CCATCTCTACCT
Flanking Amino Acid:
QLYYMGRWKLDSGILRRILH
Intron Amino Acid Position:
673

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1
64.2
41.9
Major BPS
51.3
0.03
1.3
52.4
42.7
Major PPT
71.9
0.49
0.8
64.7
31
Minor 5ss
26
-2.8
3.5
38.1
46.8
Minor BPS
48
-0
2
64.76
45.9

Associated Gene:

Gene:
SIDT2
Ensembl Gene ID:
ENSAPLG00000015640
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016299
6688111 - 6694466
6356
ENSAPLT00000046219
6688111 - 6694519
6409
ENSAPLT00000041877
6688111 - 6694519
6409
ENSAPLT00000021407
6688111 - 6694519
6409