About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_6693937_6694057_F

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6693937 - 6694057
Intron Length:
121

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGCGAGCG
5'SS Class:
major
3'SS Sequence:
ACCTCTTCTCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGGTGAC
U12 Branch Point Sequence:
GTGACCCCAACC
Flanking Amino Acid:
LYFAFYIIMKLRSGERIKLI
Intron Amino Acid Position:
754

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.1
0.59
1
59.7
39.5
Major BPS
56.2
0.15
1.3
48.8
46.3
Major PPT
78.1
0.63
0.8
69.3
36.3
Minor 5ss
24.2
-3
3.2
30.2
43
Minor BPS
48.5
-0.1
1.9
61.54
43

Associated Gene:

Gene:
SIDT2
Ensembl Gene ID:
ENSAPLG00000015640
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046219
6688111 - 6694519
6409
ENSAPLT00000041877
6688111 - 6694519
6409
ENSAPLT00000021407
6688111 - 6694519
6409