Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_6694169_6694240_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

6694169 - 6694240

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGGTGGC

5'SS Class:

strong_major

3'SS Sequence:

CCGTCCCGCATAG|A

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

GGGTGAC

U12 Branch Point Sequence:

CCGTCCCGCATA

Flanking Amino Acid:

SSSSRGSAPGRKPQPSPGST

Intron Amino Acid Position:

751

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.4

0.81

73.2

37.5

Major BPS

45.4

-0.2

1.4

34.5

43.7

Major PPT

58.9

0.2

0.9

53.1

31.2

Minor 5ss

31.6

-2.1

3.4

43.4

44.3

Minor BPS

41.3

-0.6

2.1

48.16

42.8

Associated Gene:

Gene:

SIDT2

Ensembl Gene ID:

ENSAPLG00000015640

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000041877

6688111 - 6694519

6409

ENSAPLT00000021407

6688111 - 6694519

6409

ENSAPLT00000016299

6688111 - 6694466

6356

ENSAPLT00000046219

6688111 - 6694519

6409