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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_6698009_6698094_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6698009 - 6698094
Intron Length:
86

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGTGCTGG
5'SS Class:
major
3'SS Sequence:
TGTCCTTTGGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCACAC
U12 Branch Point Sequence:
GCTCACACCACT
Flanking Amino Acid:
DIFQTVDLFEAKDMAAVQRT
Intron Amino Acid Position:
120

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1
58.4
43.1
Major BPS
55.5
0.14
1
64.3
32.4
Major PPT
75.8
0.58
1
72.7
37.5
Minor 5ss
43.9
-0.7
2.8
55.4
48.8
Minor BPS
39.2
-0.7
2.2
56.85
44.7

Associated Gene:

Gene:
TAGLN
Ensembl Gene ID:
ENSAPLG00000019163
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023706
6697575 - 6698201
627