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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_6705179_6706453_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6705179 - 6706453
Intron Length:
1275

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGGCTC
5'SS Class:
major
3'SS Sequence:
TCTGTCCCCAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCCTGAC
U12 Branch Point Sequence:
CTGTCCCCAAAG
Flanking Amino Acid:
RQSLALSAAWVTTDWDLQKG
Intron Amino Acid Position:
452

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
67.8
43.5
Major BPS
51.1
0.03
1.2
45
39.9
Major PPT
64
0.32
1
63.7
31.9
Minor 5ss
34.9
-1.7
3.4
42.7
44.4
Minor BPS
46.2
-0.4
2
53.78
46.5

Associated Gene:

Gene:
PCSK7
Ensembl Gene ID:
ENSAPLG00000014909
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015611
6700016 - 6714494
14479