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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_6724939_6725357_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6724939 - 6725357
Intron Length:
419

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTTGC
5'SS Class:
major
3'SS Sequence:
TTCTCTCTGCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTGAT
U12 Branch Point Sequence:
GCTTTGATAAAT
Flanking Amino Acid:
RIRMTKESVRDQFNDHIQMV
Intron Amino Acid Position:
66

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.2
0.59
1.1
66.9
40
Major BPS
84
0.85
0.9
75
39.9
Major PPT
74.3
0.55
0.9
69.7
36.7
Minor 5ss
41.8
-0.9
2.8
49.2
41.2
Minor BPS
45.3
-0.2
2.3
66.39
44

Associated Gene:

Gene:
RNF214
Ensembl Gene ID:
ENSAPLG00000014756
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015379
6724686 - 6727600
2915