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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_6726443_6727180_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6726443 - 6727180
Intron Length:
738

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGAGAG
5'SS Class:
major
3'SS Sequence:
ACTGTCCCCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTGAC
U12 Branch Point Sequence:
TGTTCCCTCACT
Flanking Amino Acid:
QQERAAAGAQSPAACKLCLM
Intron Amino Acid Position:
270

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1
62.1
38.7
Major BPS
59
0.22
1.2
52.4
43.3
Major PPT
68.9
0.43
0.9
58.8
37.7
Minor 5ss
22.9
-3.1
3.3
27.9
44.1
Minor BPS
62.9
0.49
2.1
85.76
40.1

Associated Gene:

Gene:
RNF214
Ensembl Gene ID:
ENSAPLG00000014756
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015379
6724686 - 6727600
2915