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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_6727277_6727534_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6727277 - 6727534
Intron Length:
258

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
CTCTCTCTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTGAC
U12 Branch Point Sequence:
TGGCTCCTGACT
Flanking Amino Acid:
MACSHVLHKECIKFWAQTNT
Intron Amino Acid Position:
302

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.7
0.98
0.7
81.3
32.8
Major BPS
68.9
0.47
1
59.2
39.1
Major PPT
85.4
0.8
0.7
80.1
25.2
Minor 5ss
30.9
-2.2
3.2
39.6
46.4
Minor BPS
51.6
0.13
1.7
69.95
40.8

Associated Gene:

Gene:
RNF214
Ensembl Gene ID:
ENSAPLG00000014756
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015379
6724686 - 6727600
2915