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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_6733763_6733886_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6733763 - 6733886
Intron Length:
124

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGGGC
5'SS Class:
strong_major
3'SS Sequence:
CTTCCTTCTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTGAG
U12 Branch Point Sequence:
CGGTGCTGAGCT
Flanking Amino Acid:
QEGRARLAAQLNILVDTGSS
Intron Amino Acid Position:
148

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
67.9
37.4
Major BPS
52.2
0.06
1.6
51.1
46.3
Major PPT
84.7
0.78
0.7
76.8
31.9
Minor 5ss
24.1
-3
3.3
32
42.8
Minor BPS
45.3
-0.2
2.1
61.44
47.8

Associated Gene:

Gene:
BACE1
Ensembl Gene ID:
ENSAPLG00000014327
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038142
6727694 - 6734327
6634