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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_6733763_6741545_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6733763 - 6741545
Intron Length:
7783

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGCTGG
5'SS Class:
major
3'SS Sequence:
CTTCCTTCTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTGAG
U12 Branch Point Sequence:
CGGTGCTGAGCT
Flanking Amino Acid:
LSTGAVKGNGLNILVDTGSS
Intron Amino Acid Position:
162

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1.1
56.7
45
Major BPS
52.2
0.06
1.6
51.1
46.3
Major PPT
84.7
0.78
0.7
76.8
31.9
Minor 5ss
37.4
-1.4
3
38.2
46.7
Minor BPS
45.3
-0.2
2.1
61.44
47.8

Associated Gene:

Gene:
BACE1
Ensembl Gene ID:
ENSAPLG00000014327
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014965
6731338 - 6742028
10691