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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_6741769_6742136_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6741769 - 6742136
Intron Length:
368

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGCAGAT
5'SS Class:
major
3'SS Sequence:
TTCTGTTTCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACAGAT
U12 Branch Point Sequence:
TCCAGCTCCACA
Flanking Amino Acid:
YDETYIPSEQEIQDFARDIG
Intron Amino Acid Position:
28

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.8
0.44
1.2
66
40.1
Major BPS
54
0.1
1
50.3
35.4
Major PPT
79.1
0.66
0.8
72.7
37.5
Minor 5ss
36.2
-1.6
3.7
55.2
49
Minor BPS
41.6
-0.6
2.3
51.67
46.1

Associated Gene:

Gene:
CEP164
Ensembl Gene ID:
ENSAPLG00000013961
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034387
6741475 - 6777748
36274
ENSAPLT00000031193
6741475 - 6776885
35411
ENSAPLT00000044253
6741475 - 6777592
36118
ENSAPLT00000022437
6741475 - 6777748
36274
ENSAPLT00000044198
6741475 - 6777748
36274
ENSAPLT00000014590
6741475 - 6778866
37392
ENSAPLT00000038672
6741475 - 6777748
36274