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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_6742894_6743830_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6742894 - 6743830
Intron Length:
937

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTAAGTAGG
5'SS Class:
major
3'SS Sequence:
TTTATCTACTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TAATATTTATCT
Flanking Amino Acid:
KEKQALKRPAEMQPGILPST
Intron Amino Acid Position:
136

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.6
0.56
1.1
66
45.2
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
74.9
0.56
0.9
74.5
35.2
Minor 5ss
38
-1.3
2.8
52.4
44.2
Minor BPS
57.5
0.31
1.8
75.19
41.1

Associated Gene:

Gene:
CEP164
Ensembl Gene ID:
ENSAPLG00000013961
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044253
6741475 - 6777592
36118