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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_6749669_6752359_F

Intron Information:

Intron Rank:
7
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
6749669 - 6752359
Intron Length:
2691

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAAAG
5'SS Class:
strong_major
3'SS Sequence:
CCCCGCCCATTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TGTGAAT
U12 Branch Point Sequence:
CAGGTGTTACCC
Flanking Amino Acid:
SALGGSFESEETSKAEEEDF
Intron Amino Acid Position:
795

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.7
33.7
Major BPS
59.4
0.24
1.5
69.7
44.2
Major PPT
57.7
0.18
0.8
55.1
29.3
Minor 5ss
32.8
-2
2.9
39.4
46.1
Minor BPS
40.8
-0.7
2.2
45.83
43.5

Associated Gene:

Gene:
CEP164
Ensembl Gene ID:
ENSAPLG00000013961
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044198
6741475 - 6777748
36274
ENSAPLT00000031193
6741475 - 6776885
35411
ENSAPLT00000022437
6741475 - 6777748
36274
ENSAPLT00000044253
6741475 - 6777592
36118