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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_6752471_6754834_F

Intron Information:

Intron Rank:
8
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
6752471 - 6754834
Intron Length:
2364

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGACGAGT
5'SS Class:
major
3'SS Sequence:
TGCTGCCTAGAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CTGTAAT
U12 Branch Point Sequence:
TTGTGTTTGACT
Flanking Amino Acid:
PAEEAGSLREESLKSRHAEE
Intron Amino Acid Position:
832

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.1
0.54
1.1
69.5
42.7
Major BPS
72.1
0.55
1.2
73.3
39.1
Major PPT
56.9
0.16
1.1
57.4
37.7
Minor 5ss
34.1
-1.8
3.3
48.8
47
Minor BPS
65
0.55
1.8
82.48
39.6

Associated Gene:

Gene:
CEP164
Ensembl Gene ID:
ENSAPLG00000013961
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031193
6741475 - 6776885
35411