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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_6752471_6756795_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6752471 - 6756795
Intron Length:
4325

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGACGAGT
5'SS Class:
major
3'SS Sequence:
TGTCTCCTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCATAAT
U12 Branch Point Sequence:
CAGGCCATAATG
Flanking Amino Acid:
PAEEAGSLRELSKASETSEC
Intron Amino Acid Position:
856

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.1
0.54
1.1
69.5
42.7
Major BPS
62.9
0.32
1.2
63.9
38.4
Major PPT
84.4
0.77
0.8
81.3
30.7
Minor 5ss
34.1
-1.8
3.3
48.8
47
Minor BPS
47.9
-0.3
1.8
48.99
45

Associated Gene:

Gene:
CEP164
Ensembl Gene ID:
ENSAPLG00000013961
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044253
6741475 - 6777592
36118