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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_6761909_6763554_F

Intron Information:

Intron Rank:
8
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
6761909 - 6763554
Intron Length:
1646

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGGTAC
5'SS Class:
strong_major
3'SS Sequence:
TTATGCTGCAAAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
ATTCTGTTACCT
Flanking Amino Acid:
EQSKRTKAAESERDQSGCET
Intron Amino Acid Position:
314

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
0.9
71.8
34.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
58.7
0.2
1.2
59.4
40.8
Minor 5ss
43.1
-0.8
3.1
57.8
47.2
Minor BPS
49.2
0.02
2.3
75.16
41.7

Associated Gene:

Gene:
CEP164
Ensembl Gene ID:
ENSAPLG00000013961
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031193
6741475 - 6776885
35411
ENSAPLT00000022437
6741475 - 6777748
36274
ENSAPLT00000044253
6741475 - 6777592
36118
ENSAPLT00000014590
6741475 - 6778866
37392
ENSAPLT00000038672
6741475 - 6777748
36274
ENSAPLT00000034387
6741475 - 6777748
36274