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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_6763705_6765783_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6763705 - 6765783
Intron Length:
2079

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGGGCT
5'SS Class:
major
3'SS Sequence:
CTTTTTTTGGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTCAC
U12 Branch Point Sequence:
TTTTGCCAAAGG
Flanking Amino Acid:
NLEELAAPQKEQPEKEIKQE
Intron Amino Acid Position:
364

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.4
0.48
1.1
65
38.2
Major BPS
72.7
0.56
1
75
30.1
Major PPT
81.3
0.71
0.9
80.6
31.4
Minor 5ss
33.1
-1.9
3.6
44.4
44.2
Minor BPS
42.9
-0.6
2.5
59.58
47.9

Associated Gene:

Gene:
CEP164
Ensembl Gene ID:
ENSAPLG00000013961
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031193
6741475 - 6776885
35411
ENSAPLT00000022437
6741475 - 6777748
36274
ENSAPLT00000044253
6741475 - 6777592
36118
ENSAPLT00000014590
6741475 - 6778866
37392
ENSAPLT00000038672
6741475 - 6777748
36274
ENSAPLT00000034387
6741475 - 6777748
36274