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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_6767344_6767520_F

Intron Information:

Intron Rank:
11
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
6767344 - 6767520
Intron Length:
177

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAAAAGT
5'SS Class:
major
3'SS Sequence:
GGAAACCTATCAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTGGAAA
U12 Branch Point Sequence:
TTTTGTTGGAAA
Flanking Amino Acid:
SETEAEEEKIRAEQEFMLQK
Intron Amino Acid Position:
481

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
0.9
73.9
36.4
Major BPS
50.3
0.01
1.5
61.7
43.1
Major PPT
53.9
0.09
1.1
48.6
44.3
Minor 5ss
29.1
-2.4
3
40.4
45.3
Minor BPS
48.3
-0.1
2
67.9
38.5

Associated Gene:

Gene:
CEP164
Ensembl Gene ID:
ENSAPLG00000013961
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022437
6741475 - 6777748
36274
ENSAPLT00000044198
6741475 - 6777748
36274
ENSAPLT00000014590
6741475 - 6778866
37392
ENSAPLT00000038672
6741475 - 6777748
36274
ENSAPLT00000034387
6741475 - 6777748
36274
ENSAPLT00000031193
6741475 - 6776885
35411
ENSAPLT00000044253
6741475 - 6777592
36118