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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_6767738_6768326_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6767738 - 6768326
Intron Length:
589

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGACTT
5'SS Class:
strong_major
3'SS Sequence:
CTTGTTCCTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCCAG
U12 Branch Point Sequence:
TTTTCCAGCAGA
Flanking Amino Acid:
KERLETEKRKATEELEKQFA
Intron Amino Acid Position:
554

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.8
80.6
33.8
Major BPS
53.4
0.08
1.7
72.5
43.5
Major PPT
78.9
0.65
0.8
74
31.2
Minor 5ss
32.5
-2
3.3
47.4
48
Minor BPS
46
-0.3
2.4
69.22
42.9

Associated Gene:

Gene:
CEP164
Ensembl Gene ID:
ENSAPLG00000013961
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022437
6741475 - 6777748
36274
ENSAPLT00000044198
6741475 - 6777748
36274
ENSAPLT00000014590
6741475 - 6778866
37392
ENSAPLT00000038672
6741475 - 6777748
36274
ENSAPLT00000034387
6741475 - 6777748
36274
ENSAPLT00000031193
6741475 - 6776885
35411
ENSAPLT00000044253
6741475 - 6777592
36118