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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_6768801_6769092_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6768801 - 6769092
Intron Length:
292

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GAG|GCAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
GTCATCCTTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTGTCAT
U12 Branch Point Sequence:
TCTGTGTCATCC
Flanking Amino Acid:
AYQVMAYERELSELMREKRQ
Intron Amino Acid Position:
624

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
100
1.18
0.7
100
0
Major BPS
67.1
0.42
1.4
71.4
45.1
Major PPT
76.6
0.6
0.9
69.5
36.7
Minor 5ss
31.3
-2.1
4
50.6
45.9
Minor BPS
40.6
-0.7
2.3
53.26
44.9

Associated Gene:

Gene:
CEP164
Ensembl Gene ID:
ENSAPLG00000013961
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022437
6741475 - 6777748
36274
ENSAPLT00000044198
6741475 - 6777748
36274
ENSAPLT00000014590
6741475 - 6778866
37392
ENSAPLT00000038672
6741475 - 6777748
36274
ENSAPLT00000034387
6741475 - 6777748
36274
ENSAPLT00000031193
6741475 - 6776885
35411
ENSAPLT00000044253
6741475 - 6777592
36118