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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_6769790_6770006_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6769790 - 6770006
Intron Length:
217

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGAGG
5'SS Class:
strong_major
3'SS Sequence:
CATCTCTGTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAA
U12 Branch Point Sequence:
CTCTCTTTAAGT
Flanking Amino Acid:
TLLQNRHREKERKLQDSENE
Intron Amino Acid Position:
713

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
69.5
42.7
Major BPS
74.7
0.61
1
65.9
40.9
Major PPT
74.5
0.55
0.9
69
36.7
Minor 5ss
26.2
-2.7
2.9
30.6
42.9
Minor BPS
67.5
0.63
1.7
78.9
44

Associated Gene:

Gene:
CEP164
Ensembl Gene ID:
ENSAPLG00000013961
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022437
6741475 - 6777748
36274
ENSAPLT00000044198
6741475 - 6777748
36274
ENSAPLT00000014590
6741475 - 6778866
37392
ENSAPLT00000038672
6741475 - 6777748
36274
ENSAPLT00000034387
6741475 - 6777748
36274
ENSAPLT00000031193
6741475 - 6776885
35411
ENSAPLT00000044253
6741475 - 6777592
36118