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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_6770091_6770965_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6770091 - 6770965
Intron Length:
875

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTCAG
5'SS Class:
strong_major
3'SS Sequence:
CTACCATATCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAC
U12 Branch Point Sequence:
TCTACCATATCT
Flanking Amino Acid:
KARSAQLLSQEESLRKKRQQ
Intron Amino Acid Position:
741

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.3
0.93
0.8
74
38.4
Major BPS
69.1
0.47
1
60.7
37.6
Major PPT
63.9
0.31
0.9
55.4
39.2
Minor 5ss
28.1
-2.5
2.7
31.4
42.8
Minor BPS
55.8
0.26
2
77.82
44.1

Associated Gene:

Gene:
CEP164
Ensembl Gene ID:
ENSAPLG00000013961
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022437
6741475 - 6777748
36274
ENSAPLT00000044198
6741475 - 6777748
36274
ENSAPLT00000014590
6741475 - 6778866
37392
ENSAPLT00000038672
6741475 - 6777748
36274
ENSAPLT00000034387
6741475 - 6777748
36274
ENSAPLT00000031193
6741475 - 6776885
35411
ENSAPLT00000044253
6741475 - 6777592
36118