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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_6772134_6772561_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6772134 - 6772561
Intron Length:
428

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTGAGTAAA
5'SS Class:
major
3'SS Sequence:
TTCAACTCCTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
AATGTTTCAACT
Flanking Amino Acid:
VEDLRETVQAHSSKEPASPP
Intron Amino Acid Position:
866

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.3
0.53
1.1
72.6
33.5
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
73
0.52
0.9
69.7
36.2
Minor 5ss
32.5
-2
2.8
43.1
43.9
Minor BPS
55.4
0.25
1.6
71.17
40

Associated Gene:

Gene:
CEP164
Ensembl Gene ID:
ENSAPLG00000013961
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022437
6741475 - 6777748
36274
ENSAPLT00000044198
6741475 - 6777748
36274
ENSAPLT00000014590
6741475 - 6778866
37392
ENSAPLT00000038672
6741475 - 6777748
36274
ENSAPLT00000034387
6741475 - 6777748
36274
ENSAPLT00000031193
6741475 - 6776885
35411
ENSAPLT00000044253
6741475 - 6777592
36118