Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_6772630_6772824_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6772630 - 6772824

Intron Length:

195

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TCA|GTGAGTATC

5'SS Class:

major

3'SS Sequence:

CTCTTTCTTGTAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AGCATAC

U12 Branch Point Sequence:

AGGAGCATACCT

Flanking Amino Acid:

SHEDSNLQFDHVRSYISAEG

Intron Amino Acid Position:

888

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.7

0.58

75.4

34.4

Major BPS

46.2

-0.2

38.4

31.9

Major PPT

84.4

0.77

0.7

80.6

24.7

Minor 5ss

-1.5

2.9

51.4

39.2

Minor BPS

41.2

-0.5

2.2

56.85

45.1

Associated Gene:

Gene:

CEP164

Ensembl Gene ID:

ENSAPLG00000013961

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000022437

6741475 - 6777748

36274

ENSAPLT00000044198

6741475 - 6777748

36274

ENSAPLT00000014590

6741475 - 6778866

37392

ENSAPLT00000038672

6741475 - 6777748

36274

ENSAPLT00000034387

6741475 - 6777748

36274

ENSAPLT00000031193

6741475 - 6776885

35411

ENSAPLT00000044253

6741475 - 6777592

36118