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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_6777593_6777866_F

Intron Information:

Intron Rank:
28
Intron Class:
major
Intron Phase:
3UTR
Intron Coordinates:
6777593 - 6777866
Intron Length:
274

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGACTT
5'SS Class:
major
3'SS Sequence:
GTTCTCTCATTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATAAAT
U12 Branch Point Sequence:
GCTTCAATAAAT
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1
71.5
40.2
Major BPS
65.7
0.39
1
71.3
30.3
Major PPT
71.9
0.49
0.9
71.4
34.3
Minor 5ss
31.1
-2.2
3.5
46.9
48.4
Minor BPS
50.4
0.09
2
72.73
43.2

Associated Gene:

Gene:
CEP164
Ensembl Gene ID:
ENSAPLG00000013961
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014590
6741475 - 6778866
37392