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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_6781678_6782033_F

Intron Information:

Intron Rank:
125035
Intron Class:
major
Intron Phase:
Intron Coordinates:
6781678 - 6782033
Intron Length:
356

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TCTACCTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGCTGAC
U12 Branch Point Sequence:
TGTCCTCTACCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.7
84
26.7
Major BPS
57.5
0.19
1.1
48.8
38.1
Major PPT
82.7
0.74
0.8
76.7
31.7
Minor 5ss
29.9
-2.3
3.2
41.3
45.2
Minor BPS
50.8
0.1
2
74.99
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017341
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042032
6781323 - 6784309
2987