About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_6796253_6796985_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6796253 - 6796985
Intron Length:
733

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGGCTG
5'SS Class:
major
3'SS Sequence:
GCCCCCTCCTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCATCAT
U12 Branch Point Sequence:
TCCTGCTGACCG
Flanking Amino Acid:
SEINATTLEDVPSQPPENVR
Intron Amino Acid Position:
934

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
64.7
46.6
Major BPS
57.9
0.2
1.4
62
44.2
Major PPT
68.6
0.42
0.8
64.8
30.7
Minor 5ss
34.8
-1.7
3.4
48.4
47.2
Minor BPS
44.8
-0.5
2.2
51.42
48.7

Associated Gene:

Gene:
DSCAML1
Ensembl Gene ID:
ENSAPLG00000012775
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013386
6795405 - 6819141
23737