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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_6798451_6798572_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6798451 - 6798572
Intron Length:
122

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGCTGCTG
5'SS Class:
major
3'SS Sequence:
TGTTTATCCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
CCCTTCTCAACA
Flanking Amino Acid:
KELTISTEEAAPDGPPMDVT
Intron Amino Acid Position:
830

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.2
0.34
1.1
53.4
45
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
78.5
0.64
0.9
70.4
40.3
Minor 5ss
27.9
-2.5
3.5
38.3
46.7
Minor BPS
58
0.25
1.6
62.43
44.3

Associated Gene:

Gene:
DSCAML1
Ensembl Gene ID:
ENSAPLG00000012775
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013386
6795405 - 6819141
23737