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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_6799559_6799961_R

Intron Information:

Intron Rank:
10
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
6799559 - 6799961
Intron Length:
403

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGGGC
5'SS Class:
strong_major
3'SS Sequence:
AAAATATTCCTAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AAAATAT
U12 Branch Point Sequence:
TTCTCCCCAAAA
Flanking Amino Acid:
NGDEVISTLKLKPADRGDSV
Intron Amino Acid Position:
699

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
67.9
37.4
Major BPS
50.9
0.02
1.1
47.4
35.7
Major PPT
58.2
0.19
1
48.3
44
Minor 5ss
24.1
-3
3.3
32
42.8
Minor BPS
52
0.06
2
70.03
41.7

Associated Gene:

Gene:
DSCAML1
Ensembl Gene ID:
ENSAPLG00000012775
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013386
6795405 - 6819141
23737