Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_6800162_6804418_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6800162 - 6804418

Intron Length:

4257

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGA|GTAAGTAGC

5'SS Class:

major

3'SS Sequence:

CTCCCTCCCGCAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGCTGAC

U12 Branch Point Sequence:

GGGTGCTGACCC

Flanking Amino Acid:

ISKSMFLTVKIPAMITSHPN

Intron Amino Acid Position:

632

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.61

1.1

69.9

41.1

Major BPS

66.3

0.4

1.1

41.8

Major PPT

74.4

0.55

0.7

68.7

Minor 5ss

37.4

-1.4

2.7

42.4

38.3

Minor BPS

44.2

-0.4

2.1

52.7

44.3

Associated Gene:

Gene:

DSCAML1

Ensembl Gene ID:

ENSAPLG00000012775

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000013386

6795405 - 6819141

23737