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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_6804852_6805017_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6804852 - 6805017
Intron Length:
166

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGCACC
5'SS Class:
major
3'SS Sequence:
TCTCGTTACCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAC
U12 Branch Point Sequence:
CTCTCGTTACCC
Flanking Amino Acid:
VSRERQLIVRVPPRFVVQPN
Intron Amino Acid Position:
533

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1
65.8
40.2
Major BPS
72.7
0.56
1
75
30.1
Major PPT
72.8
0.51
0.9
65.2
40.3
Minor 5ss
34.8
-1.7
2.8
36.3
40.5
Minor BPS
49.6
-0
2.3
65.58
46.5

Associated Gene:

Gene:
DSCAML1
Ensembl Gene ID:
ENSAPLG00000012775
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013386
6795405 - 6819141
23737