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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_6811808_6812580_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6811808 - 6812580
Intron Length:
773

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
CTCTCTTGCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCAACAC
U12 Branch Point Sequence:
CTCTCTTGCACA
Flanking Amino Acid:
AEVTGTLTVIDPLRVTLTPK
Intron Amino Acid Position:
158

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.7
84
26.7
Major BPS
44.5
-0.3
1
46.6
34.6
Major PPT
75.3
0.57
0.9
71
33.3
Minor 5ss
29.9
-2.3
3.2
41.3
45.2
Minor BPS
49.6
-0
1.9
63.35
43.5

Associated Gene:

Gene:
DSCAML1
Ensembl Gene ID:
ENSAPLG00000012775
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013386
6795405 - 6819141
23737