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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_6886307_6886768_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6886307 - 6886768
Intron Length:
462

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGTGCC
5'SS Class:
major
3'SS Sequence:
CTCTTGCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCCTCAG
U12 Branch Point Sequence:
GAGGCCTCAGCT
Flanking Amino Acid:
AFVIGLLIILSQRFHCGGKK
Intron Amino Acid Position:
47

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1
68.5
38.3
Major BPS
46.3
-0.2
1.6
53.3
44.2
Major PPT
73.9
0.54
0.8
65.2
36.3
Minor 5ss
36.1
-1.6
3.2
50.7
39.7
Minor BPS
47.6
-0.1
1.9
62.46
46.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000001480
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001468
6886113 - 6888614
2502