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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_6890714_6890875_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6890714 - 6890875
Intron Length:
162

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
CCTGTCCTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTCAC
U12 Branch Point Sequence:
GCCGCCCTCACT
Flanking Amino Acid:
RCRCSFSHKPRAPGDEEAQA
Intron Amino Acid Position:
63

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.96
0.8
77.5
32.9
Major BPS
60.1
0.25
1.1
62.9
34.3
Major PPT
79.5
0.66
0.8
72.8
32
Minor 5ss
26.6
-2.7
3
30.5
43.3
Minor BPS
45.6
-0.2
2.2
60.77
48.5

Associated Gene:

Gene:
FXYD6
Ensembl Gene ID:
ENSAPLG00000019226
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042411
6890524 - 6891920
1397
ENSAPLT00000038309
6890524 - 6891497
974
ENSAPLT00000023221
6890524 - 6892146
1623
ENSAPLT00000019037
6890524 - 6891497
974