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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_6890913_6891016_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6890913 - 6891016
Intron Length:
104

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTGAGCCGG
5'SS Class:
major
3'SS Sequence:
TCTCCTCTCGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTGAT
U12 Branch Point Sequence:
CCGTGCTGATGG
Flanking Amino Acid:
LFTVGILLILSRRCRCSFSH
Intron Amino Acid Position:
51

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
61.5
0.27
1.1
44.7
44.9
Major BPS
76.2
0.65
1.1
65.3
43.7
Major PPT
81.3
0.7
0.7
76.3
25.6
Minor 5ss
34
-1.8
3.1
44.2
44.3
Minor BPS
36.7
-1.1
2.2
35.02
46.1

Associated Gene:

Gene:
FXYD6
Ensembl Gene ID:
ENSAPLG00000019226
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038309
6890524 - 6891497
974
ENSAPLT00000023221
6890524 - 6892146
1623
ENSAPLT00000019037
6890524 - 6891497
974
ENSAPLT00000042411
6890524 - 6891920
1397