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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_6904006_6904241_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6904006 - 6904241
Intron Length:
236

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGCTC
5'SS Class:
strong_major
3'SS Sequence:
CGCCTCCCTCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCATCACGC
Flanking Amino Acid:
MKLSRPLTLSAQVRPACLPM
Intron Amino Acid Position:
387

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
0.9
73
38.2
Major BPS
100
1.24
0.5
100
0
Major PPT
71.8
0.49
0.8
61.7
35
Minor 5ss
29.9
-2.3
3.4
41
45.6
Minor BPS
46.7
-0.2
2.3
67.77
43.6

Associated Gene:

Gene:
TMPRSS13
Ensembl Gene ID:
ENSAPLG00000012108
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012630
6903282 - 6909672
6391