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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_6906211_6906434_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6906211 - 6906434
Intron Length:
224

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTAAGACGA
5'SS Class:
major
3'SS Sequence:
ATCCTGCTGCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCTCTAT
U12 Branch Point Sequence:
TCCCCCCGACCC
Flanking Amino Acid:
PAPCTTCESTRSSMFRAPCM
Intron Amino Acid Position:
112

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.9
0.52
1.3
62.6
43.8
Major BPS
49.5
-0
1.3
50.1
43.7
Major PPT
61.5
0.26
1
54.5
40.9
Minor 5ss
32.7
-2
3.1
38.7
39.7
Minor BPS
43.3
-0.5
2
53.3
44

Associated Gene:

Gene:
TMPRSS13
Ensembl Gene ID:
ENSAPLG00000012108
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012630
6903282 - 6909672
6391