Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_6936077_6936227_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6936077 - 6936227

Intron Length:

151

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGA|GTAAGTGCC

5'SS Class:

major

3'SS Sequence:

TTGTCCCTGGCAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCCTGAG

U12 Branch Point Sequence:

TCGTCCTGAGGT

Flanking Amino Acid:

RHHHPHRGPQDGGDGQHPDA

Intron Amino Acid Position:

345

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.2

0.59

1.1

69.1

37.3

Major BPS

54.8

0.12

1.6

53.3

44.2

Major PPT

73.6

0.53

69.9

36.5

Minor 5ss

35.2

-1.7

3.2

41.6

38.8

Minor BPS

49.1

0.01

68.53

Associated Gene:

Gene:

SCN2B

Ensembl Gene ID:

ENSAPLG00000011335

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000011789

6935335 - 6952341

17007