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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_6936454_6937017_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6936454 - 6937017
Intron Length:
564

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGGGTGGC
5'SS Class:
major
3'SS Sequence:
CCTGCCCCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCCGCAC
U12 Branch Point Sequence:
TCCCCCCGACCC
Flanking Amino Acid:
LHVVFQLDGDDLPRQDKEQN
Intron Amino Acid Position:
270

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1
59.5
39.2
Major BPS
42
-0.5
1.4
45
39.9
Major PPT
73.3
0.52
0.8
65.7
30.3
Minor 5ss
26.3
-2.7
3.2
31.1
38
Minor BPS
43.3
-0.5
2
53.3
44

Associated Gene:

Gene:
SCN2B
Ensembl Gene ID:
ENSAPLG00000011335
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011789
6935335 - 6952341
17007