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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_6949836_6950057_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
6949836 - 6950057
Intron Length:
222

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTCCC
5'SS Class:
strong_major
3'SS Sequence:
GCCCGCTGCCCAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TGCTGAG
U12 Branch Point Sequence:
AGTGCCCCAAGC
Flanking Amino Acid:
QECKNCSEELFLQFRTKIMN
Intron Amino Acid Position:
80

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
0.9
67.6
37.6
Major BPS
52.2
0.06
1.6
51.1
46.3
Major PPT
58.5
0.19
1
48.8
39.3
Minor 5ss
30.2
-2.3
2.8
34
35
Minor BPS
43.2
-0.5
2.1
54.7
42.9

Associated Gene:

Gene:
SCN2B
Ensembl Gene ID:
ENSAPLG00000011335
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011789
6935335 - 6952341
17007