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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_6980198_6980446_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6980198 - 6980446
Intron Length:
249

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAGGC
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCCATGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TGTTCATTTACC
Flanking Amino Acid:
GEVRLRVVQKVHFSEIHFLA
Intron Amino Acid Position:
145

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.83
0.9
69.4
35.7
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
79
0.65
0.8
73.8
30.1
Minor 5ss
25.3
-2.8
3.2
32.7
42.3
Minor BPS
63.3
0.4
1.9
77.29
38.1

Associated Gene:

Gene:
MPZL2
Ensembl Gene ID:
ENSAPLG00000010883
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011334
6977992 - 6983428
5437