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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_6981327_6983373_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6981327 - 6983373
Intron Length:
2047

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGAAA
5'SS Class:
strong_major
3'SS Sequence:
GTTTTCTCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTAAC
U12 Branch Point Sequence:
TTTTGTTTACCT
Flanking Amino Acid:
AVLFLGVQLRALWPVTALEV
Intron Amino Acid Position:
19

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.6
0.98
0.8
84
28.8
Major BPS
72.3
0.55
1
73.3
28.9
Major PPT
86.8
0.83
0.7
81.5
30.6
Minor 5ss
31.6
-2.1
3.1
39
46.4
Minor BPS
64.1
0.52
2
87.23
39

Associated Gene:

Gene:
MPZL2
Ensembl Gene ID:
ENSAPLG00000010883
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011334
6977992 - 6983428
5437