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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_6990847_6991305_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6990847 - 6991305
Intron Length:
459

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TTCCTCCTGGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAG
U12 Branch Point Sequence:
GGCTTCTGAGCA
Flanking Amino Acid:
KNIHMYLKARVCTNCMELDT
Intron Amino Acid Position:
103

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.7
82.8
23.2
Major BPS
67.4
0.43
1.5
65.3
43.7
Major PPT
76.1
0.59
0.9
73
31.9
Minor 5ss
26.6
-2.7
3
30.8
43.1
Minor BPS
48.8
-0
1.7
57.58
41.5

Associated Gene:

Gene:
CD3E
Ensembl Gene ID:
ENSAPLG00000010696
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011154
6988334 - 6992685
4352