About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_6997203_6997454_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6997203 - 6997454
Intron Length:
252

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TTTATGCTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TGTCCTTTTATG
Flanking Amino Acid:
DRFVLQVYYRMCQNCIEVDA
Intron Amino Acid Position:
238

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
77.6
32.3
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
82.7
0.74
0.9
73.7
41.7
Minor 5ss
35.7
-1.6
3.2
45.3
36.6
Minor BPS
54.9
0.01
1.7
61.49
40.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010562
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033573
6996440 - 6998942
2503
ENSAPLT00000010996
6996440 - 6999407
2968