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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_6999442_7000150_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6999442 - 7000150
Intron Length:
709

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCGCGGGCA
5'SS Class:
major
3'SS Sequence:
TGTGCCCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAC
U12 Branch Point Sequence:
GTGTCTCTGACC
Flanking Amino Acid:
RLARRVEELKGEVCSAITSK
Intron Amino Acid Position:
40

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
67.7
34.1
Major BPS
69.1
0.47
1
60.7
37.6
Major PPT
69.8
0.45
0.9
62.5
34.6
Minor 5ss
12.7
-4.3
3.7
20.7
37.7
Minor BPS
56.8
0.2
1.7
67.09
38.8

Associated Gene:

Gene:
ZW10
Ensembl Gene ID:
ENSAPLG00000010173
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010648
6999325 - 7015392
16068