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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_7000286_7005805_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7000286 - 7005805
Intron Length:
5520

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGACCC
5'SS Class:
major
3'SS Sequence:
TTTCTTATTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
AATTTCTTATTT
Flanking Amino Acid:
ELLRAGIEEQVQRDLNVAVA
Intron Amino Acid Position:
85

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1
59.5
39.8
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
86.5
0.82
0.7
86
26.8
Minor 5ss
26.4
-2.7
3.1
33.7
41.8
Minor BPS
66.2
0.59
1.5
79.09
37.2

Associated Gene:

Gene:
ZW10
Ensembl Gene ID:
ENSAPLG00000010173
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010648
6999325 - 7015392
16068