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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_7005908_7006080_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7005908 - 7006080
Intron Length:
173

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGAAG
5'SS Class:
strong_major
3'SS Sequence:
TTGGTTGTTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTACAT
U12 Branch Point Sequence:
TGTTACATGATC
Flanking Amino Acid:
VLSILKKLQEFDTAMKEYNT
Intron Amino Acid Position:
119

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.9
74.7
37
Major BPS
65
0.37
1.3
75
40
Major PPT
78.6
0.64
1
72.9
42.2
Minor 5ss
26.2
-2.7
2.9
29.6
43.4
Minor BPS
53
0.08
1.8
68.74
36.5

Associated Gene:

Gene:
ZW10
Ensembl Gene ID:
ENSAPLG00000010173
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010648
6999325 - 7015392
16068