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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_7006159_7006279_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7006159 - 7006279
Intron Length:
121

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGACT
5'SS Class:
strong_major
3'SS Sequence:
CCTTTACCGCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTGAC
U12 Branch Point Sequence:
TTTTGTTTGACC
Flanking Amino Acid:
YVVAAQQLEKARSSLKMLES
Intron Amino Acid Position:
145

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
78
36.1
Major BPS
68.7
0.47
1.2
63.1
44.5
Major PPT
69.6
0.44
1
62.5
38.8
Minor 5ss
35
-1.7
3.2
50
45.9
Minor BPS
68.8
0.58
1.7
81.35
33.5

Associated Gene:

Gene:
ZW10
Ensembl Gene ID:
ENSAPLG00000010173
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010648
6999325 - 7015392
16068