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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_7006440_7006989_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7006440 - 7006989
Intron Length:
550

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGCTTACA
5'SS Class:
major
3'SS Sequence:
TCCTTTTCTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
CACATTCTAATA
Flanking Amino Acid:
LAVWKLPPSKESSSPESAMH
Intron Amino Acid Position:
198

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.8
0.54
1
69.7
36.1
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
83.1
0.75
0.7
76.9
31.9
Minor 5ss
29.6
-2.3
2.7
35
40.7
Minor BPS
45.4
-0.3
1.6
48.78
36.3

Associated Gene:

Gene:
ZW10
Ensembl Gene ID:
ENSAPLG00000010173
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010648
6999325 - 7015392
16068